PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.086310.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 203aa    MW: 22952.4 Da    PI: 9.9746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.086310.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-104792654
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       E+ RRd++N++f eL ++l +    + +K +K++iL  Av+ I +L
  Cucsa.086310.2 47 ARKEKIRRDKLNDRFLELNSILNHG---RPPKIDKSAILGDAVRMIIQL 92
                    568*********************8...89****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3954192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.09E-74497No hitNo description
PfamPF000103.4E-84692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-64798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1248115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-1149114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MFCFSLSMLM RLREDFDEPL GMEEDVKESR SRKRMSSGSS NAFESKARKE KIRRDKLNDR  60
FLELNSILNH GRPPKIDKSA ILGDAVRMII QLRDEAQKLK ESNESSLEKI NEMKAEKNEL  120
RDEKQRLKEA KDSLEKKMKG FNTQPTFLPH PPAIPAGFSS PNQIVGGKLV PVIGYPGVSM  180
WQFMPPGAID TSQDHVLRPP VA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14754RKEKIRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-136LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-136LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145091.11e-135PREDICTED: transcription factor ILR3-like
SwissprotQ9FH379e-74ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0A0LX711e-135A0A0A0LX71_CUCSA; Uncharacterized protein
STRINGPOPTR_0011s03360.16e-85(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-71bHLH family protein